Download Center

For genome-sequenced species. Download fully annotated genomes including:

• Reference genome (FASTA)
• Gene annotations (GFF3/GTF)
• Protein sequences (FASTA)
• CDS and transcript sequences

For transcriptomic datasets. Download processed expression matrices:

• Series Matrix File (normalized)
• Supplementary processed data
• Platform annotation files

For proteomic datasets. Download protein identification results:

• Protein identifications (mzIdentML)
• Protein quantification results
• Peptide spectral libraries

For most datasets. BioProject links to all associated data types:

• Run Selector for downloads
• Linked assemblies and analyses
• Associated GEO/ArrayExpress records

For Chinese datasets. Download from NGDC/GSA:

• CRA/PRJCA accessions
• OMIX data warehouse
• Processed analysis results

For literature-only datasets. Check paper supplementary materials:

• Supplementary Tables (Excel/CSV)
• Differential expression lists
• Metabolite/protein identifications